immuneML.IO.ml_method package¶
Submodules¶
immuneML.IO.ml_method.MLExporter module¶
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class
immuneML.IO.ml_method.MLExporter.
MLExporter
[source]¶ Bases:
object
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static
export
(hp_item: immuneML.hyperparameter_optimization.states.HPItem.HPItem, path: pathlib.Path) → pathlib.Path[source]¶
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static
export_zip
(hp_item: immuneML.hyperparameter_optimization.states.HPItem.HPItem, path: pathlib.Path, label: str) → str[source]¶
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static
immuneML.IO.ml_method.MLImport module¶
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class
immuneML.IO.ml_method.MLImport.
MLImport
[source]¶ Bases:
object
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static
import_encoder
(config: immuneML.IO.ml_method.MLMethodConfiguration.MLMethodConfiguration, config_dir: pathlib.Path)[source]¶
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static
import_hp_setting
(config_dir: pathlib.Path) → Tuple[immuneML.hyperparameter_optimization.HPSetting.HPSetting, immuneML.environment.Label.Label][source]¶
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static
import_preprocessing_sequence
(config: immuneML.IO.ml_method.MLMethodConfiguration.MLMethodConfiguration, config_dir) → List[immuneML.preprocessing.Preprocessor.Preprocessor][source]¶
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static
immuneML.IO.ml_method.MLMethodConfiguration module¶
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class
immuneML.IO.ml_method.MLMethodConfiguration.
MLMethodConfiguration
(labels_with_values: dict = None, encoding_name: str = None, encoding_class: str = None, encoding_parameters: dict = None, encoding_file: str = None, preprocessing_sequence_name: str = None, preprocessing_parameters: dict = None, preprocessing_file: str = None, ml_method: str = None, ml_method_name: str = None, train_dataset_id: str = None, train_dataset_name: str = None, software_used: str = None)[source]¶ Bases:
object
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encoding_class
: str = None¶
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encoding_file
: str = None¶
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encoding_name
: str = None¶
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encoding_parameters
: dict = None¶
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labels_with_values
: dict = None¶
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ml_method
: str = None¶
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ml_method_name
: str = None¶
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preprocessing_file
: str = None¶
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preprocessing_parameters
: dict = None¶
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preprocessing_sequence_name
: str = None¶
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software_used
: str = None¶
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train_dataset_id
: str = None¶
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train_dataset_name
: str = None¶
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immuneML.IO.ml_method.UtilIO module¶
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class
immuneML.IO.ml_method.UtilIO.
UtilIO
[source]¶ Bases:
object
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static
export_comparison_data
(comp_data: immuneML.pairwise_repertoire_comparison.ComparisonData.ComparisonData, path: pathlib.Path)[source]¶
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static
export_pairwise_comparison
(pairwise_comparison: immuneML.pairwise_repertoire_comparison.PairwiseRepertoireComparison.PairwiseRepertoireComparison, path: pathlib.Path) → pathlib.Path[source]¶
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static
import_comparison_data
(path: pathlib.Path) → immuneML.pairwise_repertoire_comparison.ComparisonData.ComparisonData[source]¶
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static
import_pairwise_comparison
(path: pathlib.Path) → immuneML.pairwise_repertoire_comparison.PairwiseRepertoireComparison.PairwiseRepertoireComparison[source]¶
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static