immuneML.encodings package¶

Subpackages¶

Submodules¶

immuneML.encodings.DatasetEncoder module¶

class immuneML.encodings.DatasetEncoder.DatasetEncoder[source]¶

Bases: object

YAML specification:

encodings:
e1: <encoder_class> # encoding without parameters

e2:

<encoder_class>: # encoding with parameters
parameter: value

abstract static build_object(dataset, **params)[source]¶

abstract encode(dataset, params: immuneML.encodings.EncoderParams.EncoderParams)[source]¶

static get_additional_files() → List[str][source]¶

static load_attribute(encoder, encoder_file: pathlib.Path, attribute: str)[source]¶

static load_encoder(encoder_file: pathlib.Path)[source]¶

set_context(context: dict)[source]¶

store(encoded_dataset, params: immuneML.encodings.EncoderParams.EncoderParams)[source]¶

static store_encoder(encoder, encoder_file: pathlib.Path)[source]¶

immuneML.encodings.EncoderParams module¶

class immuneML.encodings.EncoderParams.EncoderParams(result_path: pathlib.Path, label_config: immuneML.environment.LabelConfiguration.LabelConfiguration, filename: str = '', pool_size: int = 4, model: dict = None, learn_model: bool = True, encode_labels: bool = True)[source]¶