immuneML.encodings package

Subpackages

Submodules

immuneML.encodings.DatasetEncoder module

class immuneML.encodings.DatasetEncoder.DatasetEncoder[source]

Bases: object

YAML specification:

encodings:
e1: <encoder_class> # encoding without parameters

e2:

<encoder_class>: # encoding with parameters
parameter: value

abstract static build_object(dataset, **params)[source]

abstract encode(dataset, params: EncoderParams)[source]

static get_additional_files() → List[str][source]: Should return a list with all the files that need to be stored when storing the encoder.

static load_attribute(encoder, encoder_file: Path, attribute: str)[source]

static load_encoder(encoder_file: Path)[source]

set_context(context: dict)[source]

store(encoded_dataset, params: EncoderParams)[source]

static store_encoder(encoder, encoder_file: Path)[source]

immuneML.encodings.EncoderParams module

class immuneML.encodings.EncoderParams.EncoderParams(result_path: pathlib.Path, label_config: immuneML.environment.LabelConfiguration.LabelConfiguration, filename: str = '', pool_size: int = 4, model: dict = None, learn_model: bool = True, encode_labels: bool = True)[source]