Source code for immuneML.dsl.definition_parsers.ReportParser

from immuneML.dsl.ObjectParser import ObjectParser
from immuneML.dsl.symbol_table.SymbolTable import SymbolTable
from immuneML.dsl.symbol_table.SymbolType import SymbolType
from immuneML.reports.Report import Report
from immuneML.util.Logger import log
from immuneML.util.ReflectionHandler import ReflectionHandler


[docs]class ReportParser:
[docs] @staticmethod def parse_reports(reports: dict, symbol_table: SymbolTable): if reports is None or len(reports) == 0: reports = {} for rep_id in reports.keys(): symbol_table, reports[rep_id] = ReportParser._parse_report(rep_id, reports[rep_id], symbol_table) return symbol_table, reports
@staticmethod @log def _parse_report(key: str, params: dict, symbol_table: SymbolTable): valid_values = ReflectionHandler.all_nonabstract_subclass_basic_names(Report, "", "reports/") report_object, params = ObjectParser.parse_object(params, valid_values, "", "reports/", "ReportParser", key, builder=True, return_params_dict=True) symbol_table.add(key, SymbolType.REPORT, report_object) return symbol_table, params