immuneML.dev_util package

Submodules

immuneML.dev_util.util module

immuneML.dev_util.util.load_encoded_data(labels_path: str, encoding_details_path: str, design_matrix_path: str) → immuneML.data_model.encoded_data.EncodedData.EncodedData[source]

Utility function for adding ML methods; if one encodes data using immuneML through YAML specification and exports the encoded data using DesignMatrixExporter, this function can be used to import the data and return it in the format it would be available if the ML method was called from within immuneML

Parameters

  • labels_path (str) – path to labels file as exported by the DesignMatrixExporter

  • encoding_details_path (str) – path to the details file, where example_ids, feature_names and the encoding name will be imported from

  • design_matrix_path (str) – path to csv or npy file where the design matrix is stored

Returns

EncodedData object as it would be provided to an ML method within immuneML

Module contents