immuneML

• immuneML package
  • Subpackages
    • immuneML.IO package
      • Subpackages
      • Module contents
    • immuneML.analysis package
      • Subpackages
      • Submodules
      • immuneML.analysis.AxisType module
      • immuneML.analysis.SequenceMatcher module
      • Module contents
    • immuneML.api package
      • Subpackages
      • Submodules
      • immuneML.api.api_encoding module
      • Module contents
    • immuneML.app package
      • Submodules
      • immuneML.app.ImmuneMLApp module
      • Module contents
    • immuneML.caching package
      • Submodules
      • immuneML.caching.CacheHandler module
      • immuneML.caching.CacheObjectType module
      • immuneML.caching.CacheType module
      • Module contents
    • immuneML.data_model package
      • Subpackages
      • Submodules
      • immuneML.data_model.DatasetItem module
      • Module contents
    • immuneML.dev_util package
      • Submodules
      • immuneML.dev_util.util module
      • Module contents
    • immuneML.dsl package
      • Subpackages
      • Submodules
      • immuneML.dsl.DefaultParamsLoader module
      • immuneML.dsl.ImmuneMLParser module
      • immuneML.dsl.InstructionParser module
      • immuneML.dsl.ObjectParser module
      • immuneML.dsl.OutputParser module
      • immuneML.dsl.Parser module
      • Module contents
    • immuneML.encodings package
      • Subpackages
      • Submodules
      • immuneML.encodings.DatasetEncoder module
      • immuneML.encodings.EncoderParams module
      • Module contents
    • immuneML.environment package
      • Submodules
      • immuneML.environment.Constants module
      • immuneML.environment.EnvironmentSettings module
      • immuneML.environment.Label module
      • immuneML.environment.LabelConfiguration module
      • immuneML.environment.LabelType module
      • immuneML.environment.Metric module
      • immuneML.environment.SequenceType module
      • Module contents
    • immuneML.hyperparameter_optimization package
      • Subpackages
      • Submodules
      • immuneML.hyperparameter_optimization.HPSetting module
      • immuneML.hyperparameter_optimization.HPSettingResult module
      • Module contents
    • immuneML.ml_methods package
      • Subpackages
      • Submodules
      • immuneML.ml_methods.AtchleyKmerMILClassifier module
      • immuneML.ml_methods.DeepRC module
      • immuneML.ml_methods.KNN module
      • immuneML.ml_methods.LogisticRegression module
      • immuneML.ml_methods.MLMethod module
      • immuneML.ml_methods.ProbabilisticBinaryClassifier module
      • immuneML.ml_methods.RandomForestClassifier module
      • immuneML.ml_methods.ReceptorCNN module
      • immuneML.ml_methods.SVM module
      • immuneML.ml_methods.SklearnMethod module
      • immuneML.ml_methods.TCRdistClassifier module
      • Module contents
    • immuneML.ml_metrics package
      • Submodules
      • immuneML.ml_metrics.ml_metrics module
      • Module contents
    • immuneML.pairwise_repertoire_comparison package
      • Submodules
      • immuneML.pairwise_repertoire_comparison.ComparisonData module
      • immuneML.pairwise_repertoire_comparison.ComparisonDataBatch module
      • immuneML.pairwise_repertoire_comparison.PairwiseRepertoireComparison module
      • Module contents
    • immuneML.preprocessing package
      • Subpackages
      • Submodules
      • immuneML.preprocessing.Preprocessor module
      • immuneML.preprocessing.SubjectRepertoireCollector module
      • Module contents
    • immuneML.presentation package
      • Subpackages
      • Submodules
      • immuneML.presentation.InstructionPresentation module
      • immuneML.presentation.PresentationFactory module
      • immuneML.presentation.PresentationFormat module
      • immuneML.presentation.TemplateParser module
      • Module contents
    • immuneML.reports package
      • Subpackages
      • Submodules
      • immuneML.reports.PlotlyUtil module
      • immuneML.reports.Report module
      • immuneML.reports.ReportOutput module
      • immuneML.reports.ReportResult module
      • immuneML.reports.ReportUtil module
      • Module contents
    • immuneML.simulation package
      • Subpackages
      • Submodules
      • immuneML.simulation.Implanting module
      • immuneML.simulation.Simulation module
      • immuneML.simulation.SimulationState module
      • Module contents
    • immuneML.util package
      • Submodules
      • immuneML.util.AdaptiveImportHelper module
      • immuneML.util.DistanceMetrics module
      • immuneML.util.DocEnumHelper module
      • immuneML.util.EncoderHelper module
      • immuneML.util.FilenameHandler module
      • immuneML.util.ImportHelper module
      • immuneML.util.KmerHelper module
      • immuneML.util.Logger module
      • immuneML.util.NameBuilder module
      • immuneML.util.NumpyHelper module
      • immuneML.util.ParameterValidator module
      • immuneML.util.PathBuilder module
      • immuneML.util.PositionHelper module
      • immuneML.util.ReflectionHandler module
      • immuneML.util.RepertoireBuilder module
      • immuneML.util.SequenceAnalysisHelper module
      • immuneML.util.StringHelper module
      • immuneML.util.TCRdistHelper module
      • Module contents
    • immuneML.workflows package
      • Subpackages
      • Module contents
  • Module contents