immuneML.workflows.steps.data_splitter package

Submodules

immuneML.workflows.steps.data_splitter.DataSplitter module

class immuneML.workflows.steps.data_splitter.DataSplitter.DataSplitter

Bases: immuneML.workflows.steps.Step.Step

static k_fold_split(input_params: immuneML.workflows.steps.data_splitter.DataSplitterParams.DataSplitterParams)

static leave_one_out_stratification_split(input_params: immuneML.workflows.steps.data_splitter.DataSplitterParams.DataSplitterParams)

static loocv_split(input_params: immuneML.workflows.steps.data_splitter.DataSplitterParams.DataSplitterParams)

static manual_split(input_params: immuneML.workflows.steps.data_splitter.DataSplitterParams.DataSplitterParams)

static random_split(input_params: immuneML.workflows.steps.data_splitter.DataSplitterParams.DataSplitterParams)

static run(input_params: Optional[immuneML.workflows.steps.data_splitter.DataSplitterParams.DataSplitterParams] = None)

static stratified_k_fold_split(input_params: immuneML.workflows.steps.data_splitter.DataSplitterParams.DataSplitterParams)

immuneML.workflows.steps.data_splitter.DataSplitterParams module

class immuneML.workflows.steps.data_splitter.DataSplitterParams.DataSplitterParams(dataset: immuneML.data_model.dataset.Dataset.Dataset, split_strategy: immuneML.hyperparameter_optimization.config.SplitType.SplitType, split_count: int, training_percentage: float = - 1, paths: list = None, split_config: immuneML.hyperparameter_optimization.config.SplitConfig.SplitConfig = None, label_config: immuneML.environment.LabelConfiguration.LabelConfiguration = None)

Bases: immuneML.workflows.steps.StepParams.StepParams

dataset: immuneML.data_model.dataset.Dataset.Dataset

label_config: immuneML.environment.LabelConfiguration.LabelConfiguration = None

paths: list = None

split_config: immuneML.hyperparameter_optimization.config.SplitConfig.SplitConfig = None

split_count: int

split_strategy: immuneML.hyperparameter_optimization.config.SplitType.SplitType

training_percentage: float = -1

immuneML.workflows.steps.data_splitter.LeaveOneOutSplitter module

class immuneML.workflows.steps.data_splitter.LeaveOneOutSplitter.LeaveOneOutSplitter

Bases: object

static split_dataset(input_params: immuneML.workflows.steps.data_splitter.DataSplitterParams.DataSplitterParams)

immuneML.workflows.steps.data_splitter.ManualSplitter module

class immuneML.workflows.steps.data_splitter.ManualSplitter.ManualSplitter

Bases: object

static split_dataset(input_params: immuneML.workflows.steps.data_splitter.DataSplitterParams.DataSplitterParams)

immuneML.workflows.steps.data_splitter.Util module

class immuneML.workflows.steps.data_splitter.Util.Util

Bases: object

static make_dataset(dataset: immuneML.data_model.dataset.Dataset.Dataset, indices, input_params: immuneML.workflows.steps.data_splitter.DataSplitterParams.DataSplitterParams, i: int, dataset_type: str)

static prepare_path(input_params: immuneML.workflows.steps.data_splitter.DataSplitterParams.DataSplitterParams, split_index: int) → str

Module contents