immuneML & Galaxy

All of immuneMLs functionalities are also available through a Galaxy web interface as a collection of Galaxy tools. We provide a YAML-based Galaxy tool that is equivalent to the CLI (command-line interface), as well as repertoire and receptor-level classification tools with an intuitive graphical user interface aimed at immunology experts without a machine learning background.

Galaxy tutorial

• Introduction to Galaxy

Galaxy dataset tutorials:

• How to make an immuneML dataset in Galaxy
• How to import remote AIRR datasets in Galaxy
• How to simulate an AIRR dataset in Galaxy
• How to simulate immune events into an existing AIRR dataset in Galaxy

Galaxy simple analysis tutorials:

• How to train immune receptor classifiers using the simplified Galaxy interface
• How to train immune repertoire classifiers using the simplified Galaxy interface

Galaxy advanced analysis tutorials:

• How to train ML models in Galaxy
• How to run any AIRR ML analysis in Galaxy