How to find motifs associated with disease or antigen binding state

immuneML provides several different options for recovering motifs associated with antigen specificity or immune states. Depending on the context, immuneML provides several different reports which can be used for this purpose.

Motif recovery tutorials

• Discovering positional motifs using precision and recall thresholds
• Discovering motifs learned by classifiers
• Recovering simulated immune signals
• Comparing baseline motif frequencies in repertoires