immuneML.workflows package

Subpackages

• immuneML.workflows.instructions package
  • Subpackages
    • immuneML.workflows.instructions.apply_gen_model package
      • Submodules
      • immuneML.workflows.instructions.apply_gen_model.ApplyGenModelInstruction module
      • Module contents
    • immuneML.workflows.instructions.clustering package
      • Submodules
      • immuneML.workflows.instructions.clustering.ClusteringInstruction module
      • immuneML.workflows.instructions.clustering.clustering_run_model module
      • Module contents
    • immuneML.workflows.instructions.dataset_generation package
      • Submodules
      • immuneML.workflows.instructions.dataset_generation.DatasetExportInstruction module
      • immuneML.workflows.instructions.dataset_generation.DatasetExportState module
      • Module contents
    • immuneML.workflows.instructions.exploratory_analysis package
      • Submodules
      • immuneML.workflows.instructions.exploratory_analysis.ExploratoryAnalysisInstruction module
      • immuneML.workflows.instructions.exploratory_analysis.ExploratoryAnalysisState module
      • immuneML.workflows.instructions.exploratory_analysis.ExploratoryAnalysisUnit module
      • Module contents
    • immuneML.workflows.instructions.ligo_sim_feasibility package
      • Submodules
      • immuneML.workflows.instructions.ligo_sim_feasibility.FeasibilitySummaryInstruction module
      • immuneML.workflows.instructions.ligo_sim_feasibility.feasibility_reports module
      • Module contents
    • immuneML.workflows.instructions.ligo_simulation package
      • Submodules
      • immuneML.workflows.instructions.ligo_simulation.LigoSimInstruction module
      • immuneML.workflows.instructions.ligo_simulation.runtime_reports module
      • Module contents
    • immuneML.workflows.instructions.ml_model_application package
      • Submodules
      • immuneML.workflows.instructions.ml_model_application.MLApplicationInstruction module
      • immuneML.workflows.instructions.ml_model_application.MLApplicationState module
      • Module contents
    • immuneML.workflows.instructions.subsampling package
      • Submodules
      • immuneML.workflows.instructions.subsampling.SubsamplingInstruction module
      • immuneML.workflows.instructions.subsampling.SubsamplingState module
      • Module contents
    • immuneML.workflows.instructions.train_gen_model package
      • Submodules
      • immuneML.workflows.instructions.train_gen_model.TrainGenModelInstruction module
      • Module contents
  • Submodules
  • immuneML.workflows.instructions.GenModelInstruction module
    • GenModelInstruction
    • GenModelState
      • GenModelState.exported_datasets
      • GenModelState.gen_examples_count
      • GenModelState.generated_dataset
      • GenModelState.model_path
      • GenModelState.name
      • GenModelState.report_results
      • GenModelState.result_path
  • immuneML.workflows.instructions.Instruction module
    • Instruction
      • Instruction.run()
  • immuneML.workflows.instructions.MLProcess module
    • MLProcess
      • MLProcess.run()
  • immuneML.workflows.instructions.TrainMLModelInstruction module
    • TrainMLModelInstruction
      • TrainMLModelInstruction.get_documentation()
      • TrainMLModelInstruction.print_performances()
      • TrainMLModelInstruction.run()
  • immuneML.workflows.instructions.quickstart module
    • Quickstart
      • Quickstart.build_path()
      • Quickstart.create_specfication()
      • Quickstart.run()
    • main()
  • Module contents
• immuneML.workflows.steps package
  • Subpackages
    • immuneML.workflows.steps.data_splitter package
      • Submodules
      • immuneML.workflows.steps.data_splitter.DataSplitter module
      • immuneML.workflows.steps.data_splitter.DataSplitterParams module
      • immuneML.workflows.steps.data_splitter.LeaveOneOutSplitter module
      • immuneML.workflows.steps.data_splitter.ManualSplitter module
      • immuneML.workflows.steps.data_splitter.Util module
      • Module contents
  • Submodules
  • immuneML.workflows.steps.DataEncoder module
    • DataEncoder
      • DataEncoder.run()
  • immuneML.workflows.steps.DataEncoderParams module
    • DataEncoderParams
      • DataEncoderParams.dataset
      • DataEncoderParams.encoder
      • DataEncoderParams.encoder_params
  • immuneML.workflows.steps.DataWeighter module
    • DataWeighter
      • DataWeighter.run()
  • immuneML.workflows.steps.DataWeighterParams module
    • DataWeighterParams
      • DataWeighterParams.dataset
      • DataWeighterParams.weighting_params
      • DataWeighterParams.weighting_strategy
  • immuneML.workflows.steps.MLMethodAssessment module
    • MLMethodAssessment
      • MLMethodAssessment.fieldnames
      • MLMethodAssessment.run()
  • immuneML.workflows.steps.MLMethodAssessmentParams module
    • MLMethodAssessmentParams
  • immuneML.workflows.steps.MLMethodTrainer module
    • MLMethodTrainer
      • MLMethodTrainer.run()
      • MLMethodTrainer.store()
  • immuneML.workflows.steps.MLMethodTrainerParams module
    • MLMethodTrainerParams
  • immuneML.workflows.steps.Step module
    • Step
      • Step.run()
  • immuneML.workflows.steps.StepParams module
    • StepParams
  • Module contents

Module contents