immuneML.simulation.simulation_strategy package¶
Submodules¶
immuneML.simulation.simulation_strategy.ImplantingStrategy module¶
- class immuneML.simulation.simulation_strategy.ImplantingStrategy.ImplantingStrategy[source]¶
Bases:
SimulationStrategy- MIN_RANGE_PROBABILITY = 1e-05¶
- process_sequences(sequences: BNPDataClass, seqs_per_signal_count: dict, use_p_gens: bool, sequence_type: SequenceType, sim_item: SimConfigItem, all_signals: List[Signal], remove_positives_first: bool, **kwargs) BNPDataClass[source]¶
immuneML.simulation.simulation_strategy.RejectionSamplingStrategy module¶
- class immuneML.simulation.simulation_strategy.RejectionSamplingStrategy.RejectionSamplingStrategy[source]¶
Bases:
SimulationStrategy- MAX_MOTIFS_PER_SEQUENCE = 1¶
- MAX_SIGNALS_PER_SEQUENCE = 2¶
- process_sequences(sequences: BNPDataClass, seqs_per_signal_count: dict, use_p_gens: bool, sequence_type: SequenceType, sim_item: SimConfigItem, all_signals: List[Signal], remove_positives_first: bool, **kwargs) BNPDataClass[source]¶
immuneML.simulation.simulation_strategy.SimulationStrategy module¶
- class immuneML.simulation.simulation_strategy.SimulationStrategy.SimulationStrategy[source]¶
Bases:
object- abstract process_sequences(sequences: BNPDataClass, seqs_per_signal_count: dict, use_p_gens: bool, sequence_type: SequenceType, sim_item: SimConfigItem, all_signals: List[Signal], remove_positives_first: bool, **kwargs) BNPDataClass[source]¶