Developer documentation

To get started with adding features to immuneML, follow the steps described here. These steps assume you have some experience with object-oriented programming in Python and some basic knowledge of how Git works.

1. Read the Information for new developers and other relevant tutorials as needed.

2. Follow the guide to Set up immuneML for development.

3. Create a new branch with a descriptive name from the master branch.

4. Implement your changes and add documentation.

5. Make a pull request to the master branch.

Developer tutorials

• Information for new developers
• Set up immuneML for development
• How to add a new encoding
• How to add a new machine learning method
• How to add a new report
• How to add a new preprocessing

Platform overview

• immuneML data model
• immuneML execution flow

List of all classes

• immuneML
  • immuneML package
    • Subpackages
      • immuneML.IO package
      • immuneML.analysis package
      • immuneML.api package
      • immuneML.app package
      • immuneML.caching package
      • immuneML.data_model package
      • immuneML.dev_util package
      • immuneML.dsl package
      • immuneML.encodings package
      • immuneML.environment package
      • immuneML.example_weighting package
      • immuneML.hyperparameter_optimization package
      • immuneML.ml_methods package
      • immuneML.ml_metrics package
      • immuneML.pairwise_repertoire_comparison package
      • immuneML.preprocessing package
      • immuneML.presentation package
      • immuneML.reports package
      • immuneML.simulation package
      • immuneML.util package
      • immuneML.workflows package
    • Module contents