immuneML.simulation package

Subpackages

• immuneML.simulation.dataset_generation package
  • Submodules
  • immuneML.simulation.dataset_generation.RandomDatasetGenerator module
    • RandomDatasetGenerator
      • RandomDatasetGenerator.generate_receptor_dataset()
      • RandomDatasetGenerator.generate_repertoire_dataset()
      • RandomDatasetGenerator.generate_sequence_dataset()
  • Module contents
• immuneML.simulation.implants package
  • Submodules
  • immuneML.simulation.implants.ImplantAnnotation module
    • ImplantAnnotation
      • ImplantAnnotation.motif_id
      • ImplantAnnotation.motif_instance
      • ImplantAnnotation.position
      • ImplantAnnotation.signal_id
  • immuneML.simulation.implants.Motif module
    • Motif
      • Motif.get_all_possible_instances()
      • Motif.get_alphabet()
      • Motif.get_max_length()
      • Motif.identifier
      • Motif.instantiate_motif()
  • immuneML.simulation.implants.MotifInstance module
    • MotifInstance
    • MotifInstanceGroup
  • immuneML.simulation.implants.Signal module
    • Signal
      • Signal.clonal_frequency
      • Signal.get_all_motif_instances()
      • Signal.id
      • Signal.is_present_custom_func
      • Signal.j_call
      • Signal.make_motif_instances()
      • Signal.motifs
      • Signal.sequence_position_weights
      • Signal.v_call
    • SignalPair
      • SignalPair.clonal_frequency
      • SignalPair.id
      • SignalPair.j_call
      • SignalPair.signal1
      • SignalPair.signal2
      • SignalPair.v_call
  • Module contents
• immuneML.simulation.motif_instantiation_strategy package
  • Submodules
  • immuneML.simulation.motif_instantiation_strategy.GappedKmerInstantiation module
  • immuneML.simulation.motif_instantiation_strategy.MotifInstantiationStrategy module
  • Module contents
• immuneML.simulation.sequence_implanting package
  • Submodules
  • immuneML.simulation.sequence_implanting.GappedMotifImplanting module
  • immuneML.simulation.sequence_implanting.SequenceImplantingStrategy module
  • Module contents
• immuneML.simulation.signal_implanting_strategy package
  • Submodules
  • immuneML.simulation.signal_implanting_strategy.FullSequenceImplanting module
  • immuneML.simulation.signal_implanting_strategy.HealthySequenceImplanting module
  • immuneML.simulation.signal_implanting_strategy.ImplantingComputation module
  • immuneML.simulation.signal_implanting_strategy.ReceptorImplanting module
  • immuneML.simulation.signal_implanting_strategy.SignalImplantingStrategy module
  • Module contents

Submodules

immuneML.simulation.Implanting module

immuneML.simulation.Simulation module

immuneML.simulation.SimulationState module

Module contents