Tutorials

This page provides an overview of tutorials for how to use immuneML for different use cases. If you haven’t familiarised yourself yet with the immuneML YAML specification, please see How to specify an analysis with YAML.

Dataset tutorials:

• How to import data into immuneML
• How to generate a dataset with random sequences
• Dataset simulation with LIgO

Machine learning and exploratory analysis tutorials:

• How to train and assess a receptor or repertoire-level ML classifier
• How to apply previously trained ML models to a new dataset
• How to perform an exploratory data analysis
• How to find motifs associated with disease or antigen binding state