immuneML.dsl.symbol_table package

Submodules

immuneML.dsl.symbol_table.SymbolTable module

class immuneML.dsl.symbol_table.SymbolTable.SymbolTable

Bases: object

Symbol table contains all objects parsed from the specification in the following format:

symbol	symbol_type	item	config
e1	encoding	EncodingObject	{..}	-> SymbolTableEntry object
seq1	preprocessing	[ClonesPerRepertoireFilter(), MetadataRepertoireFilter()]	{..}	-> SymbolTableEntry object

add(symbol: str, symbol_type: SymbolType, item, config: dict = None)

contains(symbol)

get(symbol)

get_by_type(symbol_type: SymbolType) → List[SymbolTableEntry]

get_config(symbol)

get_keys_by_type(symbol_type: SymbolType) → list

immuneML.dsl.symbol_table.SymbolTableEntry module

class immuneML.dsl.symbol_table.SymbolTableEntry.SymbolTableEntry(symbol: str, symbol_type: SymbolType, item, config: dict = None)

Bases: object

immuneML.dsl.symbol_table.SymbolType module

class immuneML.dsl.symbol_table.SymbolType.SymbolType(value, names=None, *, module=None, qualname=None, type=None, start=1, boundary=None)

Bases: Enum

DATASET = 3

ENCODING = 4

INSTRUCTION = 8

ML_METHOD = 2

MOTIF = 0

OUTPUT = 9

PREPROCESSING = 7

REPORT = 5

SIGNAL = 1

SIMULATION = 6

Module contents