YAML specification

All immuneML analyses are specified in a YAML-formatted file. This file describes the different analysis components (such as which machine learning models to use), the workflows to execute with these components, and all associated parameters. An introduction to the YAML specification can be found here:

General introduction

• How to specify an analysis with YAML

Detailed parameter descriptions

• Dataset parameters
• Encoding parameters
• ML method parameters
• Report parameters
• Preprocessing parameters
• Simulation parameters
• Instruction parameters