Source code for immuneML.dsl.OutputParser

from pathlib import Path

from immuneML.dsl.symbol_table.SymbolTable import SymbolTable
from immuneML.dsl.symbol_table.SymbolType import SymbolType
from immuneML.presentation.html.HTMLBuilder import HTMLBuilder
from immuneML.util.ParameterValidator import ParameterValidator
from immuneML.util.PathBuilder import PathBuilder




class OutputParser:



    @staticmethod
    def parse(specs: dict, symbol_table: SymbolTable) -> dict:
        if "output" in specs:
            ParameterValidator.assert_keys(specs["output"], ["format"], "OutputParser", "output")
            ParameterValidator.assert_in_valid_list(specs["output"]["format"], ["HTML"], "OutputParser", "format")
        else:
            specs["output"] = {"format": "HTML"}
        symbol_table.add("output", SymbolType.OUTPUT, specs["output"])

        return specs["output"]




    @staticmethod
    def generate_docs(path: Path):
        output_path = PathBuilder.build(path / "output")
        output_path = output_path / "outputs.rst"
        with output_path.open("w") as file:
            file.writelines("\n".join([el.replace('    ', '', 1) if el.startswith('    ') else el for el in
                                       HTMLBuilder.__doc__.split("\n")]))