Source code for immuneML.presentation.html.FailedGalaxyHTMLBuilder

import os
from pathlib import Path

from immuneML.environment.EnvironmentSettings import EnvironmentSettings
from immuneML.ml_methods.util.Util import Util as MLUtil
from immuneML.presentation.TemplateParser import TemplateParser
from immuneML.presentation.html.Util import Util


[docs] class FailedGalaxyHTMLBuilder: """ Constructs the HTML file to display for failed Galaxy runs """ CSS_PATH = EnvironmentSettings.html_templates_path / "css/custom.css"
[docs] @staticmethod def build(result_path, traceback_str) -> Path: logfile = result_path / "log.txt" html_map = { "css_style": Util.get_css_content(FailedGalaxyHTMLBuilder.CSS_PATH), "logfile_content": open(logfile, 'r').read() if os.path.isfile(logfile) else "Log file not found", "exception": traceback_str, 'immuneML_version': MLUtil.get_immuneML_version()} result_file = result_path / f"index.html" TemplateParser.parse(template_path=EnvironmentSettings.html_templates_path / "FailedGalaxy.html", template_map=html_map, result_path=result_file) return result_file